The Preterm Infant Resistome I study used 16S rRNA marker gene sequencing and shotgun metagenomics to profile the stool metagenome in preterm infants (born < 33 weeks gestational age) stratified by antibiotic use during their hospitalization. 84 preterm infant patients seen at the Washington University School of Medicine in St. Louis, MO, USA. 399 stool samples; 'shotgun' metagenomic sequencing. 103/399 stool samples; V4 16S rRNA gene sequencing. Prospective cohort design.
Format
PretermInfantResistome1
A MbioDataset object with 64 metadata variables, 399 shotgun stool samples, 103 16S stool samples.
It contains the following collections:
"Shotgun metagenomics: 4th level EC metagenome abundance data"
"Shotgun metagenomics: Metagenomeenzyme pathway abundance data"
"Shotgun metagenomics: Metagenomeenzyme pathway coverage data"
"Shotgun metagenomics: Genus"
"Shotgun metagenomics: Species"
"Shotgun metagenomics: Family"
"Shotgun metagenomics: Order"
"Shotgun metagenomics: Phylum"
"Shotgun metagenomics: Class"
"Shotgun metagenomics: Kingdom"
"Shotgun metagenomics: Normalized number of taxon-specific sequence matches"
"16S Order"
"16S Genus"
"16S Family"
"16S Species"
"16S Class"
"16S Phylum"
"16S Kingdom"