DESeqDataSet object from a Collection

DESeqDataSet is a subclass of RangedSummarizedExperiment, used to store the input values, intermediate calculations and results of an analysis of differential expression. The DESeqDataSet class enforces non-negative integer values in the "counts" matrix stored as the first element in the assay list. In addition, a formula which specifies the design of the experiment must be provided.

Usage

DESeqDataSetFromCollection(data, verbose = c(TRUE, FALSE), ...)

# S4 method for AbsoluteAbundanceData
DESeqDataSetFromCollection(data, verbose = c(TRUE, FALSE), ...)

Arguments

data

AbsoluteAbundanceData object

verbose

boolean indicating if timed logging is desired

...

additional arguments passed to DESeq2::DESeqDataSetFromMatrix