Visualize a correlation result as a network
Usage
correlationNetwork(
object,
correlationCoefThreshold = 0.5,
pValueThreshold = 0.05,
...
)
# S4 method for ComputeResult
correlationNetwork(
object,
correlationCoefThreshold = 0.5,
pValueThreshold = 0.05,
...
)
# S4 method for data.frame
correlationNetwork(
object,
correlationCoefThreshold = 0.5,
pValueThreshold = 0.05,
bipartiteNetwork = c(FALSE, TRUE)
)Arguments
- object
A ComputeResult or data.frame
- correlationCoefThreshold
threshold to filter edges by correlation coefficient. Edges with correlation coefficients below this threshold will be removed. Default is .5
- pValueThreshold
threshold to filter edges by p-value. Edges with p-values above this threshold will be removed. Default is .05
- ...
additional arguments
- bipartiteNetwork
Should the network use a bipartite or unipartite layout? Defaults to unipartite.
Examples
correlationOutput <- MicrobiomeDB::correlation(
getCollection(
microbiomeData::DiabImmune,
"16S (V4) Genus (Relative taxonomic abundance analysis)",
continuousMetadataOnly = TRUE),
method='spearman',
verbose=FALSE
)
correlationNetwork(correlationOutput) ## renders html widget