Get Names of Collections

Get the names of the collections in a MbioDataset object

Usage

# S4 method for MbioDataset
getCollectionNames(object)

Arguments

object

An MbioDataset

Value

A character vector of collection names

Examples

getCollectionNames(microbiomeData::DiabImmune)
#>  [1] "16S (V4) Order (Relative taxonomic abundance analysis)"                   
#>  [2] "16S (V4) Order (Absolute taxonomic abundance analysis)"                   
#>  [3] "16S (V4) Genus (Relative taxonomic abundance analysis)"                   
#>  [4] "16S (V4) Genus (Absolute taxonomic abundance analysis)"                   
#>  [5] "16S (V4) Family (Relative taxonomic abundance analysis)"                  
#>  [6] "16S (V4) Family (Absolute taxonomic abundance analysis)"                  
#>  [7] "16S (V4) Species (Relative taxonomic abundance analysis)"                 
#>  [8] "16S (V4) Species (Absolute taxonomic abundance analysis)"                 
#>  [9] "16S (V4) Class (Relative taxonomic abundance analysis)"                   
#> [10] "16S (V4) Class (Absolute taxonomic abundance analysis)"                   
#> [11] "16S (V4) Phylum (Relative taxonomic abundance analysis)"                  
#> [12] "16S (V4) Phylum (Absolute taxonomic abundance analysis)"                  
#> [13] "16S (V4) Kingdom (Relative taxonomic abundance analysis)"                 
#> [14] "16S (V4) Kingdom (Absolute taxonomic abundance analysis)"                 
#> [15] "Shotgun metagenomics 4th level EC metagenome abundance data"              
#> [16] "Shotgun metagenomics Metagenome enzyme pathway abundance data"            
#> [17] "Shotgun metagenomics Metagenome enzyme pathway coverage data"             
#> [18] "Shotgun metagenomics Genus (Relative taxonomic abundance analysis)"       
#> [19] "Shotgun metagenomics Species (Relative taxonomic abundance analysis)"     
#> [20] "Shotgun metagenomics Family (Relative taxonomic abundance analysis)"      
#> [21] "Shotgun metagenomics Order (Relative taxonomic abundance analysis)"       
#> [22] "Shotgun metagenomics Phylum (Relative taxonomic abundance analysis)"      
#> [23] "Shotgun metagenomics Class (Relative taxonomic abundance analysis)"       
#> [24] "Shotgun metagenomics Kingdom (Relative taxonomic abundance analysis)"     
#> [25] "Shotgun metagenomics Normalized number of taxon-specific sequence matches"