Skip to contents

Beta diversity

Source: R/method-betaDiv.R
betaDiv-methods.Rd

This function returns pcoa coordinates calculated from the beta diversity dissimilarity matrix.

Usage

betaDiv(
  data,
  method = c("bray", "jaccard", "jsd"),
  k = 2,
  verbose = c(TRUE, FALSE)
)

# S4 method for AbundanceData
betaDiv(
  data,
  method = c("bray", "jaccard", "jsd"),
  k = 2,
  verbose = c(TRUE, FALSE)
)

Arguments

data

AbundanceData object

method

string defining the the beta diversity dissimilarity method. Accepted values are 'bray','jaccard', and 'jsd'

k

integer determining the number of pcoa axes to return

verbose

boolean indicating if timed logging is desired

Value

ComputeResult object