Function reference • microbiomeComputations

All functions

AbsoluteAbundanceData-class AbsoluteAbundanceData: Absolute Abundance Data

AbundanceData-class AbundanceData: Abundance Data

Comparator-class Comparator: Comparator

getGroupLabels(): Get labels from a group in a Comparator

DifferentialAbundanceResult-class DifferentialAbundanceResult: Differential Abundance Result

alphaDiv(): Alpha diversity

betaDiv(): Beta diversity

getAbundances(): Get data.table of abundances from AbundanceData

internalDiffAbund(): Differential abundance

rankedAbundance(): Ranked abundance

removeIncompleteSamples(): Drop samples with incomplete SampleMetadata

selfCorrelation(<AbundanceData>): Self Correlation